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Entry: PS51216

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General information about the entry

Entry name [info] NEBULIN
Accession [info] PS51216
Entry type [info] MATRIX
Date [info] JUN-2006 (CREATED); OCT-2013 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51216
Associated ProRule [info] PRU00563

Name and characterization of the entry

Description [info] Nebulin repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=35;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3364296; R2=0.0261239; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=858.47163; R2=6.47163; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=275; N_SCORE=8.5; H_SCORE=2386; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=104; N_SCORE=4.05; H_SCORE=1519; MODE=1; TEXT='R?';
/DEFAULT: M0=-7; D=-50; I=-50; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='K'; M= -8,  0,-24, -2, -2,-22, -3,  2,-25,  8,-22,-10,  4,-12,  0,  3, -3, -8,-20,-25,-10, -2;
/M: SY='Y'; M=-12,-22,-16,-26,-22, 25,-24, -5,  0,-18,  1,  0,-18,-26,-20,-15,-15, -8, -1,  5, 30,-21;
/M: SY='T'; M= -4, -4,-19, -9, -5,-12,-19, -1,-11, -5,-11, -6, -1,-12, -3, -4,  5, 14, -8,-26, -5, -5;
/M: SY='T'; M=  0,-12,-17,-15,-11, -9,-16,-14, -3,-14, -4, -3,-10, -9,-10,-14,  0,  4, -2,-24, -8,-11;
/M: SY='V'; M= -3,-20,-20,-22,-16, -7,-23,-19, 11,-17,  6,  8,-18, -8,-15,-17, -9,  0, 12,-26,-10,-17;
/M: SY='P'; M= -3,-11,-24,-11, -4,-17,-16,-13,-10, -7,-11, -6,-10, 10, -6,-10, -4, -1,-10,-26,-15, -6;
/M: SY='D'; M=-16, 36,-29, 50, 21,-35,-10,  0,-34,  1,-26,-25, 15,-10,  2, -8,  0, -9,-27,-36,-18, 12;
/M: SY='T'; M=  0,  2,-18,  0, -3,-16,-13,-11,-16, -7,-15,-12,  1, -8, -5, -7, 10, 16, -9,-29,-12, -4;
/M: SY='P'; M= -8,-21,-31,-17, -9,-18,-22,-19, -3,-13,-10, -3,-20, 42,-12,-18,-12, -8,-10,-28,-20,-14;
/M: SY='E'; M= -8,  7,-27, 12, 16,-23,-16, -3,-19, -1,-16,-12,  1, -5,  5, -6, -3, -8,-18,-28,-13, 10;
/M: SY='L'; M=-10,-23,-22,-29,-22, 11,-28,-11, 18,-22, 19, 18,-19,-25,-16,-18,-18, -7, 12,-16,  7,-20;
/M: SY='V'; M= -7,-11,-22,-11, -3,-13,-23,-14, -1, -1,  1,  1,-12,-19, -5,  0,-10, -6,  3,-25,-10, -5;
/M: SY='H'; M=-13,-10,-26,-11, -3,-15,-22, 22,-17,  0, -7,  0, -5,-20,  8, 12,-11,-11,-17,-17,  2,  0;
/M: SY='A'; M= 26,-13, -5,-20,-14,-13, -9,-18, -4,-14, -7, -6,-11,-17,-14,-19,  5,  1,  6,-25,-15,-14;
/M: SY='K'; M= -9, -6,-27, -8,  2,-21,-20, -8,-18, 27,-16, -3, -4,-15,  6, 22,-10, -8,-13,-21, -9,  3;
/M: SY='K'; M= -6,  3,-24,  1,  6,-21,-16,  5,-19,  8,-18, -9,  5,-14,  6,  6, -3, -7,-17,-23, -7,  5;
/M: SY='A'; M= 10,  1,-12, -9,-11,-13, -9,-11, -5, -9,-12, -7,  8,-18,-10,-11,  6,  2, -1,-29,-16,-10;
/M: SY='Q'; M=  2, -1,-21, -5,  0,-20, -6, -6,-18,  0,-19,-10,  3,-13,  8, -1,  7,  5,-16,-22, -9,  3;
/M: SY='K'; M= -6,  4,-26,  5, 10,-24,-16, -6,-20, 13,-19,-10,  2,-12,  7,  4, -3, -6,-17,-24,-11,  8;
/M: SY='L'; M= -7,-13,-22,-19,-13, -6,-24, -9, 11,-16, 12, 11, -9,-22, -5,-13,-13, -7,  4,-24, -5,-10;
/M: SY='M'; M= -2,-14,-21,-19,-10, -9,-22,-11,  4,-10,  3,  6,-11,-19,  2, -8, -7, -3,  1,-19, -3, -5;
/M: SY='S'; M=  6,  7,-12,  4,  0,-20, -1, -7,-20, -8,-29,-20, 17,-12,  0, -9, 34, 17,-13,-40,-20,  0;
/M: SY='D'; M=-10, 20,-27, 26, 23,-29,-13,  0,-27,  6,-23,-18, 11, -9,  8, -2,  1, -7,-25,-32,-16, 15;
/M: SY='V'; M= -7,-14,-22,-18,-13, -7,-24,-12,  4, -3,  0,  2, -9,-21, -9,  0,-10, -5,  6,-21, -3,-13;
/M: SY='K'; M= -5, -3,-23, -4,  4,-19,-19, -8,-14, 12,-10, -5, -3,-15,  3,  6, -7, -7,-12,-23, -9,  3;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='K'; M=-12, -3,-28, -4,  5,-25,-20, -1,-27, 35,-25, -9,  0,-14,  8, 34, -8, -8,-17,-22, -8,  5;
/M: SY='E'; M= -2,  3,-24,  7, 19,-26,-13, -7,-23,  9,-17,-13, -2, -9,  7,  1, -2, -7,-19,-26,-15, 13;
/M: SY='D'; M= -2, 15,-24, 19,  9,-28, -6, -4,-25,  0,-21,-17,  8,-12,  1, -6,  3, -5,-19,-31,-17,  5;
/M: SY='Y'; M=-13,-24,-29,-26,-22, 18,-22, -3, -1,-18,  3,  0,-21,-27,-16,-15,-21,-13, -8, 27, 33,-20;
/M: SY='E'; M=-10, 11,-27, 15, 28,-27,-15,  8,-26,  7,-21,-15,  7, -9, 13,  3,  0, -8,-25,-30,-14, 20;
/M: SY='K'; M= -6,  2,-26,  1,  8,-23,-15, -3,-24, 18,-22,-11,  3,-13,  7, 11, -3, -6,-19,-19,-10,  7;
/M: SY='T'; M= -2, -2,-21, -4, -1,-13,-15, -9,-11, -8, -9, -5, -2,-15, -2, -9,  1,  2, -9,-18, -8, -1;
/M: SY='K'; M= -9, -8,-27, -9,  0,-21,-21, -9,-15, 25,-15, -2, -5,-14,  3, 18,-10, -7,-10,-22, -8,  0;
/M: SY='G'; M=  5, -3,-20, -4, -7,-23,  7, -9,-23, -5,-19,-13, -1,-13, -7, -7,  3, -3,-15,-25,-17, -7;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 320 in 14 different sequences
Number of true positive hits 320 in 14 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 181
Feature key [info] REPEAT
Feature description [info] Nebulin
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
14 sequences

LASP1_BOVIN (Q3B7M5), LASP1_CAEEL (P34416), LASP1_DROME (Q8I7C3), 
LASP1_HUMAN (Q14847), LASP1_MOUSE (Q61792), LASP1_PONAB (Q5R5W0), 
LASP1_RABIT (O77506), LASP1_RAT   (Q99MZ8), LNEBL_MOUSE (Q9DC07), 
NEBL_HUMAN  (O76041), NEBL_MOUSE  (Q0II04), NEBU_HUMAN  (P20929), 
NRAP_HUMAN  (Q86VF7), NRAP_MOUSE  (Q80XB4)
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