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Entry: PS51216

General information about the entry

Entry name [info] NEBULIN
Accession [info] PS51216
Entry type [info] MATRIX
Date [info] 01-JUN-2006 CREATED; 01-OCT-2013 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC51216
Associated ProRule [info] PRU00563

Name and characterization of the entry

Description [info] Nebulin repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=35;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3364296; R2=0.0261239; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=275; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=104; N_SCORE=4.05; MODE=1; TEXT='R?';
/DEFAULT: M0=-7; D=-50; I=-50; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='K'; M= -8,  0,-24, -2, -2,-22, -3,  2,-25,  8,-22,-10,  4,-12,  0,  3, -3, -8,-20,-25,-10, -2;
/M: SY='Y'; M=-12,-22,-16,-26,-22, 25,-24, -5,  0,-18,  1,  0,-18,-26,-20,-15,-15, -8, -1,  5, 30,-21;
/M: SY='T'; M= -4, -4,-19, -9, -5,-12,-19, -1,-11, -5,-11, -6, -1,-12, -3, -4,  5, 14, -8,-26, -5, -5;
/M: SY='T'; M=  0,-12,-17,-15,-11, -9,-16,-14, -3,-14, -4, -3,-10, -9,-10,-14,  0,  4, -2,-24, -8,-11;
/M: SY='V'; M= -3,-20,-20,-22,-16, -7,-23,-19, 11,-17,  6,  8,-18, -8,-15,-17, -9,  0, 12,-26,-10,-17;
/M: SY='P'; M= -3,-11,-24,-11, -4,-17,-16,-13,-10, -7,-11, -6,-10, 10, -6,-10, -4, -1,-10,-26,-15, -6;
/M: SY='D'; M=-16, 36,-29, 50, 21,-35,-10,  0,-34,  1,-26,-25, 15,-10,  2, -8,  0, -9,-27,-36,-18, 12;
/M: SY='T'; M=  0,  2,-18,  0, -3,-16,-13,-11,-16, -7,-15,-12,  1, -8, -5, -7, 10, 16, -9,-29,-12, -4;
/M: SY='P'; M= -8,-21,-31,-17, -9,-18,-22,-19, -3,-13,-10, -3,-20, 42,-12,-18,-12, -8,-10,-28,-20,-14;
/M: SY='E'; M= -8,  7,-27, 12, 16,-23,-16, -3,-19, -1,-16,-12,  1, -5,  5, -6, -3, -8,-18,-28,-13, 10;
/M: SY='L'; M=-10,-23,-22,-29,-22, 11,-28,-11, 18,-22, 19, 18,-19,-25,-16,-18,-18, -7, 12,-16,  7,-20;
/M: SY='V'; M= -7,-11,-22,-11, -3,-13,-23,-14, -1, -1,  1,  1,-12,-19, -5,  0,-10, -6,  3,-25,-10, -5;
/M: SY='H'; M=-13,-10,-26,-11, -3,-15,-22, 22,-17,  0, -7,  0, -5,-20,  8, 12,-11,-11,-17,-17,  2,  0;
/M: SY='A'; M= 26,-13, -5,-20,-14,-13, -9,-18, -4,-14, -7, -6,-11,-17,-14,-19,  5,  1,  6,-25,-15,-14;
/M: SY='K'; M= -9, -6,-27, -8,  2,-21,-20, -8,-18, 27,-16, -3, -4,-15,  6, 22,-10, -8,-13,-21, -9,  3;
/M: SY='K'; M= -6,  3,-24,  1,  6,-21,-16,  5,-19,  8,-18, -9,  5,-14,  6,  6, -3, -7,-17,-23, -7,  5;
/M: SY='A'; M= 10,  1,-12, -9,-11,-13, -9,-11, -5, -9,-12, -7,  8,-18,-10,-11,  6,  2, -1,-29,-16,-10;
/M: SY='Q'; M=  2, -1,-21, -5,  0,-20, -6, -6,-18,  0,-19,-10,  3,-13,  8, -1,  7,  5,-16,-22, -9,  3;
/M: SY='K'; M= -6,  4,-26,  5, 10,-24,-16, -6,-20, 13,-19,-10,  2,-12,  7,  4, -3, -6,-17,-24,-11,  8;
/M: SY='L'; M= -7,-13,-22,-19,-13, -6,-24, -9, 11,-16, 12, 11, -9,-22, -5,-13,-13, -7,  4,-24, -5,-10;
/M: SY='M'; M= -2,-14,-21,-19,-10, -9,-22,-11,  4,-10,  3,  6,-11,-19,  2, -8, -7, -3,  1,-19, -3, -5;
/M: SY='S'; M=  6,  7,-12,  4,  0,-20, -1, -7,-20, -8,-29,-20, 17,-12,  0, -9, 34, 17,-13,-40,-20,  0;
/M: SY='D'; M=-10, 20,-27, 26, 23,-29,-13,  0,-27,  6,-23,-18, 11, -9,  8, -2,  1, -7,-25,-32,-16, 15;
/M: SY='V'; M= -7,-14,-22,-18,-13, -7,-24,-12,  4, -3,  0,  2, -9,-21, -9,  0,-10, -5,  6,-21, -3,-13;
/M: SY='K'; M= -5, -3,-23, -4,  4,-19,-19, -8,-14, 12,-10, -5, -3,-15,  3,  6, -7, -7,-12,-23, -9,  3;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='K'; M=-12, -3,-28, -4,  5,-25,-20, -1,-27, 35,-25, -9,  0,-14,  8, 34, -8, -8,-17,-22, -8,  5;
/M: SY='E'; M= -2,  3,-24,  7, 19,-26,-13, -7,-23,  9,-17,-13, -2, -9,  7,  1, -2, -7,-19,-26,-15, 13;
/M: SY='D'; M= -2, 15,-24, 19,  9,-28, -6, -4,-25,  0,-21,-17,  8,-12,  1, -6,  3, -5,-19,-31,-17,  5;
/M: SY='Y'; M=-13,-24,-29,-26,-22, 18,-22, -3, -1,-18,  3,  0,-21,-27,-16,-15,-21,-13, -8, 27, 33,-20;
/M: SY='E'; M=-10, 11,-27, 15, 28,-27,-15,  8,-26,  7,-21,-15,  7, -9, 13,  3,  0, -8,-25,-30,-14, 20;
/M: SY='K'; M= -6,  2,-26,  1,  8,-23,-15, -3,-24, 18,-22,-11,  3,-13,  7, 11, -3, -6,-19,-19,-10,  7;
/M: SY='T'; M= -2, -2,-21, -4, -1,-13,-15, -9,-11, -8, -9, -5, -2,-15, -2, -9,  1,  2, -9,-18, -8, -1;
/M: SY='K'; M= -9, -8,-27, -9,  0,-21,-21, -9,-15, 25,-15, -2, -5,-14,  3, 18,-10, -7,-10,-22, -8,  0;
/M: SY='G'; M=  5, -3,-20, -4, -7,-23,  7, -9,-23, -5,-19,-13, -1,-13, -7, -7,  3, -3,-15,-25,-17, -7;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 320 in 14 different sequences
Number of true positive hits 320 in 14 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 181
Feature key [info] REPEAT
Feature description [info] Nebulin
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
14 sequences

LASP1_BOVIN (Q3B7M5    ), LASP1_CAEEL (P34416    ), LASP1_DROME (Q8I7C3    ), 
LASP1_HUMAN (Q14847    ), LASP1_MOUSE (Q61792    ), LASP1_PONAB (Q5R5W0    ), 
LASP1_RABIT (O77506    ), LASP1_RAT   (Q99MZ8    ), LNEBL_MOUSE (Q9DC07    ), 
NEBL_HUMAN  (O76041    ), NEBL_MOUSE  (Q0II04    ), NEBU_HUMAN  (P20929    ), 
NRAP_HUMAN  (Q86VF7    ), NRAP_MOUSE  (Q80XB4    )
» more


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View entry in raw text format (no links)
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