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Entry: PS51389

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General information about the entry

Entry name [info] XIN
Accession [info] PS51389
Entry type [info] MATRIX
Date [info] JUN-2008 (CREATED); OCT-2013 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51389
Associated ProRule [info] PRU00721

Name and characterization of the entry

Description [info] Xin repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=16;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=15;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2644210; R2=0.0075506; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=923.59669; R2=5.76980; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=826; N_SCORE=8.5; H_SCORE=4922; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=614; N_SCORE=6.9; H_SCORE=4160; MODE=1; TEXT='RR';
/DEFAULT: M0=-45; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-105; BD=-105;
/M: SY='G'; M=  31,  13, -95, -99,-108,  88,-101,-104,  -3,-106, -98, -83, -98, -94, -99, -30, -19,  -5,-106,-104;
/M: SY='D'; M= -41,   8,  93,  24,-113,   8, -83,-112, -83,-112,-106,  64, -97,  11, -91, -25, -85,-109,-122,-101;
/M: SY='V'; M= -84, -97,-111,-105, -22,-113,-112,  16,-102, -35, -73,-105,-107,-105, -30, -94,   6,  99,-114, -90;
/M: SY='Q'; M= -89,-108,  -5, -26,-111, -96,  31,-107,  58,-104, -93,  -7, -96,  96,  19,  23, -16,-105,-107, -92;
/M: SY='T'; M= -28,-101, -26, -82,-103, -27,  -5, -98,  44, -49,  -8,  28, -17,  35,  35,  32,  47, -30,-110, -95;
/M: SY='T'; M=  23,  38, -24, -86, -19,  -3, -90, -94,  18, -96, -11,  38, -98,  41, -87,  16,  46,  -7,-106,   5;
/M: SY='R'; M= -90,  25, -92, -83, -99,-102, -90, -37,  65, -12, -89, -84, -98, -78,  70,   0,  49, -24,-108, -94;
/M: SY='W'; M= -95,-113, -91,  21,  13,-102,  80,-102,  25, -38, -90, -89,-100,  58, -13,  -8, -96,-105, 118,  20;
/M: SY='L'; M= -93,  -2,-110,-102,  -1,-113, -98,  27,  13,  61,  55,-104,-108, -96, -12,-101, -90,  32,-101,  -8;
/M: SY='F'; M=-105,-101,-118,-113, 126,-113, -98, -78,-109, -26, -80,-107,-116,-119,-106,-104, -97, -83, -71, -50;
/M: SY='E'; M= -89,-111, -66, 107,-114,   8, -84,-114, -73,-107,-101, -85, -88,  52, -81, -85, -91,-107,-108,-102;
/M: SY='T'; M=  26, -95, -84, -18,-102, -89,   2, -96, -86,-100, -94,  44,  14, -86, -93,  46,  84, -89,-115, -97;
/M: SY='Q'; M= -90,  32,  22,  49, -39, -29, -86, -33,  -3,  -4, -89, -21, -96,  83, -51, -29,  24, -96,-106, -21;
/M: SY='P'; M= -29,-105,  -9,   5,-109, -42, -89,-103, -85,-108, -98,  43,  83,  29, -93,  51,  28,-101,-113,-102;
/M: SY='L'; M=  21,  18, -14,-100,  33, -46,  24,  -2,-101,  61,  25, -99,-107, -97,-101,  -1, -89, -16,-101, -81;
/M: SY='D'; M= -48,  51,  74,  25,-103,   8, -87, -40, -87,-106,-101,  27, -20, -84, -94,  44, -14,-101,-113,  11;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 171 in 7 different sequences
Number of true positive hits 171 in 7 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 28
Feature key [info] REPEAT
Feature description [info] Xin
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
7 sequences

XIRP1_CHICK (Q91957), XIRP1_DANRE (Q5PZ43), XIRP1_HUMAN (Q702N8), 
XIRP1_MOUSE (O70373), XIRP2_HUMAN (A4UGR9), XIRP2_MOUSE (Q4U4S6), 
XIRP2_RAT   (Q71LX6)
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