 |
|
| Entry: PS51073 |
General information about the entry
| Entry name [info] | RPEL |
| Accession [info] | PS51073 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2005 CREATED;
01-OCT-2013 DATA UPDATE; 07-NOV-2018 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51073 |
| Associated ProRule [info] | PRU00401 |
Name and characterization of the entry
| Description [info] | RPEL repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=26; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=24; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2495611; R2=0.0168148; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=432; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=319; N_SCORE=6.6; MODE=1; TEXT='RR'; /DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='D'; M=-12, 23,-26, 28, 20,-29,-13, -2,-30, 9,-26,-21, 15,-10, 6, 3, 4, -2,-24,-33,-17, 13; /M: SY='S'; M= 4, -7,-14, -8, -8,-12,-12,-13, -9,-10,-12,-10, -3,-16, -8, -8, 15, 12, 0,-29,-10, -8; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='E'; M= -5, 3,-24, 1, 14,-21,-17, -6,-16, 7,-15,-10, 5,-12, 7, 4, 0, -2,-16,-27,-14, 10; /M: SY='R'; M=-14,-12,-27,-11, 2,-15,-23, -2,-13, 11, -6, -3, -7,-19, 2, 27,-12,-10, -9,-23, -8, -1; /M: SY='K'; M=-11, -1,-30, -1, 9,-29,-20, -3,-30, 45,-29, -9, 1,-11, 10, 31,-10,-11,-21,-21, -8, 9; /M: SY='L'; M= -9,-29,-22,-33,-24, 5,-32,-22, 30,-28, 35, 23,-26,-26,-19,-22,-25, -9, 19,-21, -1,-23; /M: SY='A'; M= 12, -6,-17,-10, -3,-22, -3, -8,-16, -3,-18, -6, -1,-13, 6, 0, 12, 2,-11,-26,-16, 1; /M: SY='H'; M= -9, -5,-23, -9, -6,-12,-12, 10,-10, -9, -9, 1, 1,-20, 6, -6, -4, -8,-11,-24, -5, 0; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='P'; M= -7,-14,-33, -8, 2,-28,-18,-13,-22, 2,-27,-16,-11, 46, 1, 0, -5, -7,-25,-27,-23, -2; /M: SY='D'; M= -2, 7,-23, 9, 1,-25, -3,-13,-24, -8,-22,-18, 4, 4, -6,-13, 8, 8,-18,-31,-20, -3; /M: SY='R'; M=-15,-13,-31,-11, -3,-21,-22, -1,-18, 14,-18, -8, -6, 2, 1, 28,-11,-10,-15,-23,-11, -5; /M: SY='E'; M= 1, 2,-23, 5, 22,-25,-15, -6,-18, 3,-17,-10, -2, -8, 12, -3, 5, -4,-15,-28,-16, 17; /M: SY='E'; M= -8, 9,-27, 16, 40,-30,-18, -1,-27, 6,-21,-17, 2, -4, 21, -1, 5, -2,-26,-30,-18, 31; /M: SY='L'; M= -9,-30,-19,-30,-21, 9,-30,-21, 21,-29, 46, 19,-30,-30,-21,-20,-28, -9, 14,-21, -1,-21; /M: SY='V'; M= -6,-20,-21,-20, -8, -6,-29,-21, 17,-13, 9, 6,-20,-21,-14,-15,-13, -6, 19,-26, -8,-12; /M: SY='E'; M= -8, 16,-26, 14, 22,-28,-13, 1,-26, 13,-24,-16, 17,-10, 14, 8, 1, -7,-26,-30,-17, 18; /M: SY='R'; M=-13, -5,-29, -7, 6,-26,-20, -2,-21, 28,-19, 1, -3,-14, 20, 31, -9,-10,-18,-20, -9, 12; /M: SY='N'; M= -9, 8,-27, 2, -5,-26, 17, 18,-30, -5,-27,-14, 20,-19, 0, -4, 0,-13,-29,-28,-13, -3; /M: SY='I'; M= -9,-30,-28,-39,-29, 1,-39,-29, 46,-29, 22, 19,-21,-21,-21,-29,-20, -9, 30,-21, -1,-29; /M: SY='L'; M=-10,-29,-22,-32,-22, 7,-32,-21, 27,-29, 41, 23,-27,-27,-19,-22,-27,-10, 15,-20, 0,-22; /M: SY='Q'; M=-12, -7,-31, -4, 11,-26,-21, 12,-19, -1,-16, -4, -7, 13, 17, 0, -8,-12,-25,-26,-11, 12; /M: SY='E'; M= -2,-10,-24,-10, 6, -9,-17,-10,-13, -5,-13, -6,-10, 5, -1, -7, -2, -6,-13,-22,-12, 2; /M: SY='B'; M= -7, 6,-20, 5, 1,-16,-15, -8,-11, -5, -8, -5, 4,-16, -4, -7, 2, 3, -8,-31,-13, -1; /M: SY='E'; M= -5, 7,-23, 8, 10,-25,-12, -8,-23, 4,-26,-18, 8, 6, 1, -3, 9, 6,-20,-33,-19, 5; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 99 in 30 different sequences |
| Number of true positive hits | 99 in 30 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 4 |
| Feature key [info] | REPEAT |
| Feature description [info] | RPEL |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
30 sequences
MRTFA_HUMAN (Q969V6 ), MRTFA_MOUSE (Q8K4J6 ), MRTFA_XENLA (Q8AYC2 ), MRTFB_HUMAN (Q9ULH7 ), MRTFB_MOUSE (P59759 ), MRTFB_XENLA (Q8AYC1 ), MYCD_HUMAN (Q8IZQ8 ), MYCD_MOUSE (Q8VIM5 ), MYCD_PIG (Q7YR76 ), MYCD_RAT (Q8R5I7 ), PHAR1_CHICK (Q801X6 ), PHAR1_HUMAN (Q9C0D0 ), PHAR1_MOUSE (Q2M3X8 ), PHAR1_RAT (P62024 ), PHAR1_XENLA (Q6GLU8 ), PHAR2_HUMAN (O75167 ), PHAR2_RAT (P62025 ), PHAR3_HUMAN (Q96KR7 ), PHAR3_MOUSE (Q8BYK5 ), PHAR3_RAT (Q6RFY2 ), PHAR4_BOVIN (F1MCY2 ), PHAR4_CHICK (F1N8V3 ), PHAR4_HUMAN (Q8IZ21 ), PHAR4_MOUSE (Q501J7 ), PHAR4_PONAB (Q5RAU1 ), PHAR4_XENTR (F7EC58 ), PHR4A_DANRE (F1QIC4 ), PHR4A_XENLA (Q5HZA1 ), PHR4B_DANRE (Q6PEI3 ), PHR4B_XENLA (Q5XHF3 )» more
|
| PDB [Detailed view] |
10 PDB
2V51; 2V52; 2YJE; 2YJF; 4B1U; 4B1V; 4B1W; 4B1X; 4B1Y; 4B1Z |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission