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Entry: PS51765

General information about the entry

Entry name [info] ZF_RAG1
Accession [info] PS51765
Entry type [info] MATRIX
Date [info] 01-JUL-2015 CREATED;
10-MAY-2017 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC51765
Associated ProRule [info] PRU01101

Name and characterization of the entry

Description [info] Zinc finger RAG1-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=30;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=27;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.5304735; R2=0.0080731; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3081.7521973; R2=2.1434782; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=678; H_SCORE=4535; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=368; H_SCORE=3871; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-72; D=-120; I=-120; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='L';  M=-103,-106,-122,-114, -79,-123,-107, -68,-115,  86, -67,-121,-121,-109,-112,-114, -99,   8,-110, -91;
/M: SY='P';  M=  15,-112,-107,-101,-106,  11,-105, -11,-103, -23,  52,-102,  76,-101,-109,  18, -92,  -2,-115,-106;
/M: SY='V';  M= -98,-107,-122,-115, -84,-123,-114,  34,-114,  57, -72,-118,-118,-111,-114,-110, -95,  61,-115, -94;
/M: SY='R';  M=-103,-114,-104, -92, -99,-115, -95, -96,  47,  41, -87, -98,-112, -85,  81,-102,-100, -98,-111, -97;
/M: SY='C';  M= -98, 151,-118,-119,-109,-114,-118,-116,-114,-106,-106,-105,-129,-122,-121,-101, -99,-103,-139,-119;
/M: SY='P';  M=-100,-122,-102, -93,-120,-104,-106,-109, -99,-118,-106,-104, 116,-102,-110, -10,  32,-110,-118,-117;
/M: SY='V';  M=  26,-106,-110,-105,-102,   6,-110, -77, -96, -92, -91,-102,-111,-100,  35,   2, -91,  70,-119,-103;
/M: SY='K';  M= -98,-116, -84,  62,-119,-107, -94,-117,  77,-115,-106, -90,  30,   4, -75,  -7, -94,-113,-113,-107;
/M: SY='E';  M= -91,-112,  33,  74,-117,  53, -92,-120, -86,-116,-109,  35, -97, -82, -95,  -7, -93,-114,-117,-109;
/M: SY='C';  M= -91, 158,-111,-111,-101,-107,-111,-108,-107, -99, -99, -97,-122,-115,-113, -94, -91, -96,-131,-112;
/M: SY='D';  M= -95,-112,  76,  15,-117,  19,  22,-117, -84,-115,-107,  49,-102,  28,   4,   0, -91,-114,-123,-102;
/M: SY='E';  M= -95,-116,  37, 107,-119,-109, -88,-119, -77,-112,-109, -88, -91, -70, -87, -91, -95,-112,-117,-108;
/M: SY='E';  M= -96,-115, -75,  98,-103,-111, -92,-103, -82,  18, -95, -96, -96,  15, -90, -95, -97,-103,  64, -98;
/M: SY='V';  M= -92,-105,-119,-114, -86,-121,-120,  74,-111, -71, -74,-112,-111,-111,-113,-104, -88,  82,-116, -94;
/M: SY='R';  M= -93,-106,-101, -95, -96,-104, -95, -91, -83,  42, -85, -94,  18, -88,  66,  45,  26, -92,-112, -96;
/M: SY='H';  M= -99,-106,-107,-103, -83,-113,  88, -78,-105,  76, -70,-101,-113, -97,-102,   7, -96, -84,-113, -84;
/M: SY='G';  M= -91,-113,  69,  46,-119,  74, -96,-123, -92,-118,-112, -81, -99, -89,-101, -87, -98,-117,-117,-109;
/M: SY='K';  M= -90,-108, -90, -81,-112, -98, -92,-112,  91,-112,-102, -82, -98, -76,  15,  59, -85,-107,-110,-100;
/M: SY='Y';  M=-108,-115,-110,-109,  72,-115, -83, -92,   6, -87, -88,-107,-119,-102, -97,-104,-102, -97, -70, 113;
/M: SY='N';  M=  44,-109, -97,-100,-118,  29, -99,-116, -92,-117,-108,  51,-109, -94,  33,  24, -93,-108,-120,-111;
/M: SY='H';  M= -18,-119,  14,   3,-119,-105,  84,-119, -87,-114,-102,  27,  21,  69,  10, -93,-100,-117,-124, -98;
/M: SY='H';  M=-106,-119, -94, -94,-109,-109, 140,-125, -98,-110, -96, -83,-110, -88, -93,   8,-104,-124,-141, -79;
/M: SY='C';  M=-103, 104,-124,-120,  -1,-123,-117,  24,-118,  38, -84,-116,-125,-118,-120,-110,-101,  11,-120,-100;
/M: SY='S';  M= -92,-107,-107,-106,  20,-103,-103, -92,-106,  44, -89, -98,-113, -99,-108,  78, -87, -94,-112, -94;
/M: SY='S';  M= -91,-108, -93,-100,  19,  15, -97,-114,  -4,-115,-109,  63,-109, -94, -99,  69, -86,-111,-117,-101;
/M: SY='H';  M=-107,-119, -94, -97,-108,   1, 134,-121,-100, -33, -95,   6,-111, -90, -96, -98,-106,-121,-137, -82;
/M: SY='K';  M=-104,  81,-101, -91,-107,-112,  31,-117,  86,-113,-104, -93,-110, -89, -76,-100,-100,-113,-112,  25;
/M: SY='E';  M=-109,-123, -90,  80,  51,-123,-102,-112, -92, -22,-106,-107,-109, -90,   8,-107,-108,-111,-111, -96;
/M: SY='M';  M=-100,-117, -95,  51,-117,-112,-104,-112,  17,-109,  56, -98,-107, -91, -98,  38,  32,-108,-126,-111;
/M: SY='K';  M=-105,-118, -99,  -2,-121,-115,-104,-119,  80,-119,-110, -94,-107, -88,   1, -96,  45,-113,-121,-111;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 8 in 8 different sequences
Number of true positive hits 8 in 8 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] ZN_FING
Feature description [info] RAG1-type
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
8 sequences

RAG1_CHICK  (P24271    ), RAG1_DANRE  (O13033    ), RAG1_HUMAN  (P15918    ), 
RAG1_MOUSE  (P15919    ), RAG1_ONCMY  (Q91187    ), RAG1_PIG    (Q867B5    ), 
RAG1_RABIT  (P34088    ), RAG1_XENLA  (Q91829    )
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PDB
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1 PDB

1RMD

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