PROSITE entry PS51765
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General information about the entry
| Entry name [info] | ZF_RAG1 |
| Accession [info] | PS51765 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUL-2015 CREATED;
10-MAY-2017 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51765 |
| Associated ProRule [info] | PRU01101 |
Name and characterization of the entry
| Description [info] | Zinc finger RAG1-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=30; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=27; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.5304735; R2=0.0080731; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3081.7521973; R2=2.1434782; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=678; H_SCORE=4535; N_SCORE=9.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=368; H_SCORE=3871; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-72; D=-120; I=-120; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='L'; M=-103,-106,-122,-114, -79,-123,-107, -68,-115, 86, -67,-121,-121,-109,-112,-114, -99, 8,-110, -91; /M: SY='P'; M= 15,-112,-107,-101,-106, 11,-105, -11,-103, -23, 52,-102, 76,-101,-109, 18, -92, -2,-115,-106; /M: SY='V'; M= -98,-107,-122,-115, -84,-123,-114, 34,-114, 57, -72,-118,-118,-111,-114,-110, -95, 61,-115, -94; /M: SY='R'; M=-103,-114,-104, -92, -99,-115, -95, -96, 47, 41, -87, -98,-112, -85, 81,-102,-100, -98,-111, -97; /M: SY='C'; M= -98, 151,-118,-119,-109,-114,-118,-116,-114,-106,-106,-105,-129,-122,-121,-101, -99,-103,-139,-119; /M: SY='P'; M=-100,-122,-102, -93,-120,-104,-106,-109, -99,-118,-106,-104, 116,-102,-110, -10, 32,-110,-118,-117; /M: SY='V'; M= 26,-106,-110,-105,-102, 6,-110, -77, -96, -92, -91,-102,-111,-100, 35, 2, -91, 70,-119,-103; /M: SY='K'; M= -98,-116, -84, 62,-119,-107, -94,-117, 77,-115,-106, -90, 30, 4, -75, -7, -94,-113,-113,-107; /M: SY='E'; M= -91,-112, 33, 74,-117, 53, -92,-120, -86,-116,-109, 35, -97, -82, -95, -7, -93,-114,-117,-109; /M: SY='C'; M= -91, 158,-111,-111,-101,-107,-111,-108,-107, -99, -99, -97,-122,-115,-113, -94, -91, -96,-131,-112; /M: SY='D'; M= -95,-112, 76, 15,-117, 19, 22,-117, -84,-115,-107, 49,-102, 28, 4, 0, -91,-114,-123,-102; /M: SY='E'; M= -95,-116, 37, 107,-119,-109, -88,-119, -77,-112,-109, -88, -91, -70, -87, -91, -95,-112,-117,-108; /M: SY='E'; M= -96,-115, -75, 98,-103,-111, -92,-103, -82, 18, -95, -96, -96, 15, -90, -95, -97,-103, 64, -98; /M: SY='V'; M= -92,-105,-119,-114, -86,-121,-120, 74,-111, -71, -74,-112,-111,-111,-113,-104, -88, 82,-116, -94; /M: SY='R'; M= -93,-106,-101, -95, -96,-104, -95, -91, -83, 42, -85, -94, 18, -88, 66, 45, 26, -92,-112, -96; /M: SY='H'; M= -99,-106,-107,-103, -83,-113, 88, -78,-105, 76, -70,-101,-113, -97,-102, 7, -96, -84,-113, -84; /M: SY='G'; M= -91,-113, 69, 46,-119, 74, -96,-123, -92,-118,-112, -81, -99, -89,-101, -87, -98,-117,-117,-109; /M: SY='K'; M= -90,-108, -90, -81,-112, -98, -92,-112, 91,-112,-102, -82, -98, -76, 15, 59, -85,-107,-110,-100; /M: SY='Y'; M=-108,-115,-110,-109, 72,-115, -83, -92, 6, -87, -88,-107,-119,-102, -97,-104,-102, -97, -70, 113; /M: SY='N'; M= 44,-109, -97,-100,-118, 29, -99,-116, -92,-117,-108, 51,-109, -94, 33, 24, -93,-108,-120,-111; /M: SY='H'; M= -18,-119, 14, 3,-119,-105, 84,-119, -87,-114,-102, 27, 21, 69, 10, -93,-100,-117,-124, -98; /M: SY='H'; M=-106,-119, -94, -94,-109,-109, 140,-125, -98,-110, -96, -83,-110, -88, -93, 8,-104,-124,-141, -79; /M: SY='C'; M=-103, 104,-124,-120, -1,-123,-117, 24,-118, 38, -84,-116,-125,-118,-120,-110,-101, 11,-120,-100; /M: SY='S'; M= -92,-107,-107,-106, 20,-103,-103, -92,-106, 44, -89, -98,-113, -99,-108, 78, -87, -94,-112, -94; /M: SY='S'; M= -91,-108, -93,-100, 19, 15, -97,-114, -4,-115,-109, 63,-109, -94, -99, 69, -86,-111,-117,-101; /M: SY='H'; M=-107,-119, -94, -97,-108, 1, 134,-121,-100, -33, -95, 6,-111, -90, -96, -98,-106,-121,-137, -82; /M: SY='K'; M=-104, 81,-101, -91,-107,-112, 31,-117, 86,-113,-104, -93,-110, -89, -76,-100,-100,-113,-112, 25; /M: SY='E'; M=-109,-123, -90, 80, 51,-123,-102,-112, -92, -22,-106,-107,-109, -90, 8,-107,-108,-111,-111, -96; /M: SY='M'; M=-100,-117, -95, 51,-117,-112,-104,-112, 17,-109, 56, -98,-107, -91, -98, 38, 32,-108,-126,-111; /M: SY='K'; M=-105,-118, -99, -2,-121,-115,-104,-119, 80,-119,-110, -94,-107, -88, 1, -96, 45,-113,-121,-111; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 8 in 8 different sequences |
| Number of true positive hits | 8 in 8 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | RAG1-type |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
8 sequences
RAG1_CHICK (P24271), RAG1_DANRE (O13033), RAG1_HUMAN (P15918), RAG1_MOUSE (P15919), RAG1_ONCMY (Q91187), RAG1_PIG(Q867B5), RAG1_RABIT (P34088), RAG1_XENLA (Q91829)» more
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| PDB [Detailed view] |
29 PDB
1RMD; 3JBW; 3JBX; 3JBY; 6CG0; 6CIJ; 6DBI; 6DBJ; 6DBL; 6DBO; 6DBQ; 6DBR; 6DBT; 6DBU; 6DBV; 6DBW; 6DBX; 6OEM; 6OEN; 6OEO; 6OEP; 6OEQ; 6OER; 6OES; 6OET; 6V0V; 6XNX; 6XNY; 6XNZ » more |