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| Entry: PS51801 |
General information about the entry
| Entry name [info] | ZF_CCHC_NOA |
| Accession [info] | PS51801 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2016 CREATED;
13-FEB-2019 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51801 |
| Associated ProRule [info] | PRU01142 |
Name and characterization of the entry
| Description [info] | Zinc finger CCHC NOA-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=31; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=28; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3267822; R2=0.0114355; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3317.8935547; R2=0.5922078; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=1109; H_SCORE=3975; N_SCORE=15.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=365; H_SCORE=3534; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-102; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='Q'; M= 21, -6,-208, -23, -46, -5, -19, -67, -21, -85,-209, -17, 60, 76, 31, -17, -1, -40, 3, -63; /M: SY='R'; M= -60,-227, -8, 39, -68, -32, -48,-219,-105, -57,-211,-131, 67, 39, 68, -31, 16, -67, -78, 17; /M: SY='G'; M= -1,-220, 9, 33,-223, 49, -7,-220,-131, -39, -92, 37, 25, -17, -30, 29, 19, -66,-228,-217; /M: SY='Q'; M= -9,-223, -21, -12, -73, -39,-209, 33, -27, 11, 7, -69, 36, 75, 9, 3, -13, -40,-223,-210; /M: SY='P'; M= -1,-222, -17, -15,-226, 36, -39,-222,-206,-140,-216, -49, 81, -5, -47, 61, 10,-218,-227, -79; /M: SY='D'; M= -25,-222, 68, 57, -83, -78,-207, 32, -37, -26, 19, -18,-213, -3, -53, -35, 18, -12,-230,-212; /M: SY='H'; M=-216,-220,-222,-218, 38,-228, 85, -58,-100, 75, -56, -62,-228,-102, -81,-218,-212,-197,-209, 56; /M: SY='Q'; M= -13, 41,-207, -32,-216,-214, -14, -12, -40, -37, -18, -15,-217, 90, 46, 39, -63, -33, -12, 4; /M: SY='C'; M=-208, 162,-228,-228,-219,-224,-228,-225,-224,-216,-216,-214,-239,-232,-231,-211,-208,-213,-248,-229; /M: SY='P'; M=-214,-239,-214,-202,-233,-215,-217,-221,-210,-231,-218,-220, 136,-214,-223,-211,-206,-226,-226,-231; /M: SY='K'; M= -66,-224,-210,-200,-212, -71, 72, 36, 80, 7,-199,-202,-217, 0, 38, -84,-207, -63,-222, -40; /M: SY='C'; M=-208, 162,-228,-228,-219,-224,-228,-225,-224,-216,-216,-214,-239,-232,-231,-211,-208,-213,-248,-229; /M: SY='M'; M= -21,-218, -25, -19, 9, 17, 3,-204, -62, 36, 59, 47,-219, 39,-209, 32, -76,-206,-221, -41; /M: SY='Q'; M= 11, -6,-100, 38, -3, -29,-203, 8, 38, -88, -10, -18,-216, 49, 43,-203, -30,-209,-214, 42; /M: SY='C'; M= -41, 48,-214,-212, -9, 15, -16, 33, -16, -58, 2,-112, -66, 16, -2, 35, 42, 20,-224, -59; /M: SY='F'; M= 6, 38,-229,-225, 107,-225,-210,-196,-222, 17,-195,-222,-230,-225,-220,-215, -57, -75,-194, 61; /M: SY='P'; M=-206, 26, 11,-201,-225, -76, -73,-222, 7,-226,-216, 47, 84,-201, 38, 48, 6,-220,-229, -57; /M: SY='D'; M= -24,-224, 114, 0,-231,-209,-201,-229,-201,-229,-226, 29,-213,-200,-209, 10, -10,-224,-244,-218; /M: SY='M'; M= -81,-222, -24, 37, -17, -82,-212, 33, -12, 53, 63,-216,-221, -37, -55,-214, 6, -93,-219, 6; /I: I=-28; MI=0; MD=-71; IM=0; DM=-71; /M: SY='D'; M= 18,-222, 87, 39,-228, -97, -30,-222, -45,-222, -18, -43,-213, -10,-208, 25, 25, -43,-237,-217; /M: SY='T'; M= -28,-217,-198, 64,-221,-214,-210, -69, -94,-215, -18, -18, -40, -12,-209, 45, 78, 1,-232,-216; /M: SY='L'; M= -68, 25,-231,-225, 33,-232,-213,-186,-225, 87,-182,-229,-233,-220,-223,-223,-212, -79,-210, 44; /M: SY='Q'; M=-210,-226,-206, 36, 4,-221,-203,-207, -58, 35, 9, -61,-218, 111,-199, -66, -61, -63,-220,-205; /M: SY='I'; M= -93,-223, -55, 23,-214, -80, -49, 63, 25, -32,-203, 59,-218,-110, 30, 33,-202,-198,-228,-212; /M: SY='H'; M=-219,-231,-203,-203,-218,-221, 157,-236,-208,-218,-203,-192,-220,-197,-202,-209,-218,-235,-253,-186; /M: SY='V'; M= 8, 54,-232,-226, -13,-229,-231, 29,-224, -27, -18,-226,-228,-225,-226,-215,-205, 86, 24,-209; /M: SY='M'; M= 24,-219, 12, 29,-218,-212, 6,-208,-206, -65, 90, 54, -35, -42,-211, 13, 15, -33,-233,-213; /M: SY='D'; M=-213,-231, 90, 80, -59,-220, -34,-229,-198,-226, -35,-196,-213, 18, -62, -58,-209, -63,-234, -6; /M: SY='C'; M=-212, 157,-230,-230, -44,-227, 2,-228,-226,-218,-218,-217,-241,-233,-119,-214,-212,-216,-249,-228; /M: SY='C'; M= 20, 87,-231,-227, -37,-228,-226, 70,-105, 36, 23,-223, -56,-222,-227,-216,-209, -42,-227,-210; /M: SY='Q'; M= -76, -34, 69, -20,-229, 6, -24, -3, -5, -60,-216, 16,-219, 73, 1, -15, -52,-220,-234,-217; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 18 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CCHC NOA-type |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
NEMO_BOVIN (Q95KU9 ), NEMO_DROME (Q9GYV5 ), NEMO_HUMAN (Q9Y6K9 ), NEMO_MOUSE (O88522 ), NEMO_PIG (A9QT41 ), NEMO_RAT (Q6TMG5 ), OPTN_CHICK (Q90Z16 ), OPTN_DANRE (Q5RI56 ), OPTN_HUMAN (Q96CV9 ), OPTN_MACFA (Q95KA2 ), OPTN_MACMU (Q861Q8 ), OPTN_MOUSE (Q8K3K8 ), OPTN_PIG (Q7YS99 ), OPTN_PONAB (Q5R923 ), OPTN_RAT (Q8R5M4 ), OPTN_XENLA (Q5M7B7 ), TNIP2_HUMAN (Q8NFZ5 ), TNIP2_MOUSE (Q99JG7 )» more
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| PDB [Detailed view] |
5 PDB
2JVX; 2JVY; 2LO4; 5AAY; 5AAZ |
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