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PROSITE entry PS51709


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PURL: https://purl.expasy.org/prosite/signature/PS51709

Direct ScanProsite submission
General information about the entry

Entry name [info] G_TRME
Accession [info] PS51709
Entry type [info] MATRIX
Date [info] 01-MAR-2014 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51709
Associated ProRule [info] PRU01046

Name and characterization of the entry

Description [info] TrmE-type guanine nucleotide-binding (G) domain profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=158;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=153;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7178934; R2=0.0077687; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=29711.8925781; R2=5.6928220; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=5894; H_SCORE=63265; N_SCORE=48.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=487; H_SCORE=32484; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-139; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;

...
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Post-processing [info]

COMPETES_HIT_WITH PS51705; PS51706; PS51710; PS51711; PS51712; PS51713; PS51714; PS51715; PS51716; PS51717; PS51718; PS51719; PS51720; PS51721; PS51722

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 596 in 596 different sequences
Number of true positive hits 596 in 596 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] TrmE-type G
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 596 sequences 

GTPB3_DANRE (Q501Z5), GTPB3_DICDI (Q55C52), GTPB3_HUMAN (Q969Y2),
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PDB
[Detailed view]		 9 PDB

1RFL; 1XZP; 1XZQ; 2GJ8; 2GJ9; 2GJA; 3GEE; 3GEH; 3GEI