Home  |  Contact
Entry: PS51907

General information about the entry

Entry name [info] ZF_UBZ3
Accession [info] PS51907
Entry type [info] MATRIX
Date [info] 13-NOV-2019 CREATED;
26-FEB-2020 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC51905
Associated ProRule [info] PRU01255

Name and characterization of the entry

Description [info] Zinc finger UBZ3-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=35;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=32;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7654955; R2=0.0089867; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3893.9023438; R2=0.5351545; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1084; H_SCORE=4474; N_SCORE=12.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=416; H_SCORE=4117; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-75; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='S';  M=   8, -42,  27,  14, -25, -40,  34, -56, -16, -29, -72, -12,  19,  22, -59,  37,  16,   4, -25, -44;
/M: SY='W';  M=   0, -63,  26,  15, -47, -24, -17, -42,  -6, -23, -29,  11,  30,  29, -68,  25,  15, -16,  63, -54;
/M: SY='E';  M=   0,-221,   9,  45, -32, -11, -45,  26, -54, -12, -49, -24,  24,  -9, -35,  13,  -1,   8, -58, -28;
/M: SY='D';  M= -17, -59,  68,  20, -32, -28, -40, -71,  -6, -21, -61,  21,  38, -12, -37,  -3,  18, -36, -52, -69;
/M: SY='T';  M= -22, -12,  18, -20, -17,  -9,  18, -46, -23,  -6,  22, -14, -18,  17, -28,  15,  55, -20,  25, -15;
/M: SY='Y';  M= -76,-103, -42,   3,  43,-225, -22,  10, -18,  11, -40, -42,-130,   2, -67, -82, -25,  15,  21,  91;
/M: SY='T';  M= -42, -29, -45, -11,  11,-113,  -9,   7,  35,   2, -24, -25,   0,  19,  11,  -9,  42,   7,-221, -16;
/M: SY='C';  M=-208, 161,-228,-228,-219,-224, -36,-226,-223,-216,-216,-214,-103,-231,-118,-211,-208,-213,-248,-228;
/M: SY='P';  M= -16, -31,  59,  44,-106, -67, -31,-110, -17,-105,-217,  -5,  65, -31,-103,  48,  -4, -77,-231,-218;
/M: SY='R';  M= -90,-122,   8,  47,-121,-220, -28,  -7,  44, -30,-129, -37, -24,  46,  70, -71, -27, -78,-224, -60;
/M: SY='C';  M=-208, 161,-228,-228,-218,-224,-227,-225,-224,-216,-216,-214,-239,-232,-230,-211,-208,-213,-246, -52;
/M: SY='G';  M= -87,-222,   5, -63,-226,  72,  33,-230,  33,-227, -82,  55, -93,  22, -15,  -1, -74,-226,-226, -55;
/M: SY='K';  M=  24,-125, -60,  30, -53,-122, -49,   2,  60, -37,  -5, -35, -64,  54, -23,   4,  -7, -25,-223,-211;
/M: SY='S';  M= -18, -75, -23,  23, -18, -99,   4, -43,   6, -21,  35,  20,  -7,  12,  26,  37,  18, -26, -34,  -3;
/M: SY='I';  M=-210,-121,-231,-227,  55,-233,-224,  77,-223,  29,  12,-132, -85,-223,-102, -73,-114,  49,-215, -90;
/M: SY='P';  M=   6,-224,  14,  18, -71, -62,  -2, -79, -11,   4, -66, -36,  88, -27, -74,  20,  -6, -51,-226,-100;
/M: SY='V';  M= -11, -14,  29,  29, -36, -61, -58,  12, -35,  -8,  -6, -20,  30, -23, -34,  19,  -1,  33, -54,-211;
/M: SY='W';  M=   0, -41,  37,  36, -43, -54,  38, -92, -44, -41, -65, -10,   1,  10, -66,  22,  22, -44,  97, -38;
/I:         I=-19; MD=-47;
/M: SY='E';  M= -24,-119,  55,  72,   5, -54, -63,-162,  26, -52, -27, -24, -72,  16, -31, -12, -42, -27, -71, -62; D=-19;
/I:         I=-19; MI=0; MD=-47; IM=0; DM=-47;
/M: SY='M';  M= -67,-221,-147, -48,  41,-143, -61,   4,  12,  35,  72,-216,-223,  -5,  39, -98,-105,   7,  -6,  32;
/M: SY='Q';  M=  -8,-226,  19,   9,-226, -25, -66, -65, -56, -26, -36, -23,  58,  97, -42, -22, -12, -54,-225,-214;
/M: SY='E';  M= -87, -58,-101, 109,-227,-218,-202,-108, -50, -79,-217, -34,-205, -25,-200,  30,  -6,-105,-228,-218;
/M: SY='H';  M=-217,-228,-200,-201,-215,-218, 160,-233,-205,-216,-201,-190,-217,-194,-199,-206,-215,-233,-251,-184;
/M: SY='Q';  M= -11, -40,  20,  27, -90,-154, -64, -56,   5,  23,  40,  27,-215,  48,  -8,  29,  -2, -49,-226,-210;
/M: SY='D';  M=-215,-228, 128,-179,-234,-211,-200,-232, -83, -97,-229, -51,-214,-201,-210,-203,-204,-229,-250,-217;
/M: SY='W';  M=-131,-230,-228,-107,  78,-128,  32, -79, -98, -97,-203,-223,-229,-104,-116,-219,-218,-212, 132, 100;
/M: SY='H';  M=-216,-228,-200, -65,-215,-218, 159,-233,-205,-216,-201,-190,-217,-194,-199,-206,-215,-233,-250,-184;
/M: SY='F';  M= -26,-217,-230,-108,  93,-228,-214, -11,-222,  30,  32,-223,-228,-118,-221,-217, -70,  41,-202,  32;
/M: SY='A';  M= 108,-209,-215,-207,-222,-197,-216,-210,-210, -85,-207, -68,-214,-206,-214, -85,-199, -59,-223,-218;
/M: SY='K';  M= -58, -56,-144,  12, -72,-221, -36, -42,  67,  38,  51,-206,-217,  60,   6, -57,-100, -28,-221,-207;
/M: SY='D';  M= -56,-225,  84,  42,-228,-107, -22,-227,  42,-167, -24,  16,-212,  11,  28,   4, -70,-223,-233,-215;
/M: SY='L';  M=-213,-217,-102,-224,-189,-233,-217,  15,-225,  95,  -2,-229,-230,-218,-222,-224,-209, -32,-219, -96;
/M: SY='Q';  M= -15,-223, -34,  -1,-114,-106,  25, -95, -77,-148, -75, -27,-213, 112, -42,  57,-201, -75,-222, -15;
/M: SY='Q';  M=  -5,-119,  30,  47,-145, -95, -14, -71,  43, -58, -66,  20,-213,  60,  39,  -2, -46,-107, -70,-213;
/M: SY='E';  M= -43,-224, -23,  82,-228, -39,-109,-226,   0,-153, -67, -17, -55,  72, -14,  45, -70,-221,-226,-100;
/I:         E1=0; IE=-255; DE=-255;
» more

Post-processing [info]

COMPETES_HIT_WITH PS50157; PS51801; PS51905; PS51906; PS51908

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 7 in 6 different sequences
Number of true positive hits 7 in 6 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] ZN_FING
Feature description [info] UBZ3-type
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
6 sequences

ESO1_SCHPO  (O42917    ), POLH_DROME  (Q9VNX1    ), POLH_HUMAN  (Q9Y253    ), 
POLH_MOUSE  (Q9JJN0    ), POLH_YEAST  (Q04049    ), POLK_ARATH  (Q6JDV7    )
» more

PDB
[Detailed view]
2 PDB

2I5O; 3WUP

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission