PROSITE entry PS51907
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General information about the entry
| Entry name [info] | ZF_UBZ3 |
| Accession [info] | PS51907 |
| Entry type [info] | MATRIX |
| Date [info] |
13-NOV-2019 CREATED;
03-AUG-2022 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51905 |
| Associated ProRule [info] | PRU01255 |
Name and characterization of the entry
| Description [info] | Zinc finger UBZ3-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=35; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=32; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7665536; R2=0.0088976; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1094; N_SCORE=12.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=420; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-76; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='S'; M= 9, -41, 26, 15, -25, -39, 24, -55, -15, -28, -72, -11, 18, 23, -59, 38, 17, 5, -24, -43; /M: SY='W'; M= 1, -62, 25, 16, -46, -24, -17, -41, -5, -22, -28, 11, 29, 30, -67, 26, 7, -16, 64, -53; /M: SY='E'; M= 1,-221, 10, 46, -31, -10, -44, 27, -53, -13, -48, -23, 17, -9, -34, 12, 0, 9, -58, -27; /M: SY='D'; M= -16, -58, 67, 21, -32, -27, -39, -70, -5, -22, -60, 19, 39, -11, -36, -2, 19, -35, -51, -68; /M: SY='T'; M= -22, -11, 14, -30, -16, -8, 19, -45, -22, -5, 23, -13, -17, 18, -27, 16, 56, -23, 26, -14; /M: SY='Y'; M= -75,-102, -41, 4, 44,-225, -21, 9, -17, 7, -40, -41,-129, -1, -66, -81, -24, 16, 22, 92; /M: SY='T'; M= -41, -28, -55, -10, 12,-112, -8, 8, 35, 3, -23, -25, 1, 10, 12, -8, 42, 7,-221, -15; /M: SY='C'; M=-208, 161,-228,-228,-218,-224, -35,-226,-224,-216,-216,-214,-239,-231,-230,-211,-208,-213,-248,-228; /I: I=-28; MD=-71; /M: SY='P'; M= -15,-121, 59, 45,-105, -66, -30,-109, -16,-104,-217, -9, 63, -31,-102, 48, -3, -77,-232,-218; D=-28; /I: I=-28; MD=-71; /M: SY='R'; M= -89,-121, 9, 48,-120,-221, -27, -9, 42, -30,-128, -63, -23, 46, 71, -90, -27, -77,-224, -60; D=-28; /I: I=-28; MI=-71; IM=-71; DM=-71; /M: SY='C'; M=-208, 162,-228,-228,-219,-224,-228,-225,-224,-216,-216,-214,-239,-232,-231,-211,-208,-213,-248,-229; /M: SY='G'; M= -86,-222, 6, -62,-226, 73, 34,-230, 33,-227, -81, 56, -92, 15, -14, 0, -73,-226,-226, -54; /M: SY='K'; M= 25,-124, -59, 29, -52,-121, -48, 0, 61, -36, -4, -35, -63, 53, -22, 5, -15, -37,-222, -51; /M: SY='S'; M= -20, -74, -22, 24, -17, -98, 5, -42, 7, -20, 36, 21, -6, 21, 21, 36, 13, -26, -33, -2; /M: SY='I'; M=-210,-121,-231,-227, 49,-233,-224, 77,-223, 30, 13,-131, -84,-222,-102, -72,-113, 51,-216, -90; /M: SY='P'; M= 6,-224, 15, 19, -70, -61, -1, -78, -10, 4, -65, -35, 88, -26, -73, 21, -5, -87,-226, -99; /M: SY='V'; M= -10, -13, 25, 30, -17, -60, -57, 13, -34, -7, -6, -19, 30, -22, -33, 20, -12, 32, -53,-210; /M: SY='W'; M= 1, -40, 38, 32, -42, -53, 39, -91, -43, -40, -64, -9, 2, 1, -65, 23, 28, -43, 97, -37; /I: I=-19; MD=-47; /M: SY='E'; M= -24,-118, 58, 73, 6, -53, -63,-161, 14, -52, -26, -24, -72, 17, -30, -12, -41, -26, -71, -62; D=-19; /I: I=-19; MI=0; MD=-47; IM=0; DM=-47; /M: SY='M'; M= -67,-221,-146, -47, 41,-142, -60, 5, 13, 36, 73,-215,-223, -4, 40, -97,-104, 7, -5, 25; /M: SY='Q'; M= -7,-226, 17, 10,-225, -24, -65, -64, -55, -25, -35, -22, 59, 96, -41, -21, -11, -53,-225,-214; /M: SY='E'; M= -86, -57,-100, 109,-227,-217,-202,-107, -56, -78,-217, -33,-205, -24,-200, 31, -5,-105,-228,-218; /M: SY='H'; M=-217,-228,-200,-201,-215,-218, 160,-233,-205,-216,-201,-190,-217,-194,-199,-206,-215,-233,-251,-184; /M: SY='Q'; M= -11, -39, 21, 27, -89,-154, -63, -55, 5, 21, 38, 26,-215, 49, -8, 30, -1, -48,-226,-210; /M: SY='D'; M=-215,-228, 128,-179,-234,-211,-200,-232, -82, -97,-229, -50,-214,-201,-210,-203,-204,-229,-250,-217; /M: SY='W'; M=-130,-230,-228,-106, 79,-128, 33, -78, -98, -96,-203,-223,-229,-103,-115,-219,-218,-212, 132, 99; /M: SY='H'; M=-217,-228,-200,-201,-215,-218, 160,-233,-205,-216,-201,-190,-217,-194,-199,-206,-215,-233,-251,-184; /M: SY='F'; M= -25,-217,-230,-108, 93,-228,-214, -10,-222, 30, 33,-223,-228,-117,-221,-217, -69, 41,-202, 33; /M: SY='A'; M= 108,-209,-215,-207,-222,-197,-216,-210,-210, -85,-207, -68,-214,-206,-214, -84,-199, -59,-223,-218; /M: SY='K'; M= -57, -55,-144, 13, -72,-221, -35, -41, 66, 39, 51,-207,-217, 58, 7, -56,-100, -27,-221,-207; /M: SY='D'; M= -55,-225, 84, 43,-228,-106, -21,-227, 40,-166, -23, 14,-212, 12, 29, 5, -69,-223,-233,-215; /M: SY='L'; M=-213,-217,-102,-224,-189,-233,-217, 16,-225, 95, -2,-229,-230,-218,-222,-224,-209, -32,-219, -96; /M: SY='Q'; M= -14,-223, -33, 0,-114,-106, 26, -95, -76,-147, -74, -26,-213, 112, -41, 55,-201, -74,-222, -14; /M: SY='Q'; M= -4,-118, 31, 48,-144, -94, -13, -70, 42, -58, -65, 21,-213, 56, 40, -1, -46,-107, -69,-213; /M: SY='E'; M= -42,-224, -22, 82,-228, -39,-108,-226, -6,-153, -66, -17, -67, 72, -19, 45, -69,-221,-226, -99; /I: E1=0; IE=-255; DE=-255;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS50157; PS51801; PS51905; PS51906; PS51908 |
Numerical results [info]
| Total number of hits | 7 in 6 different sequences |
| Number of true positive hits | 7 in 6 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | ZN_FING |
| Feature description [info] | UBZ3-type |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
6 sequences
ESO1_SCHPO (O42917), POLH_DROME (Q9VNX1), POLH_HUMAN (Q9Y253), POLH_MOUSE (Q9JJN0), POLH_YEAST (Q04049), POLK_ARATH (Q6JDV7)» more
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| PDB [Detailed view] |
2 PDB
2I5O; 3WUP |